Secondary analysis

Getting started

• Setting up your workflow
• Introduction to Secondary pipeline

Launching cases

• Uploading files for secondary analysis
• Create a case
• Create multiple cases using sample sheet file

Analysing a case

• Monitoring secondary analysis progress
• Navigating between secondary analysis and tertiary analysis

Output Files

• Summary of Secondary Analysis Output Files
• BAM File
• Quality control
• Log2ratio bedGraph

Version changelog

• IFU version changelog
• Secondary Analysis Release Notes