Overview of cases

All cases page lists all the cases that have been created. Each case can be identified by its Case ID number. It also shows the patient's Sex, Age, Symptoms (HPOs used for the variant analysis), the analysis Start time, the User to which the case has been assigned, and the current Status of the case. A family icon before the Case ID indicates it is a trio case.

Hovering over Case ID, Sex, Age and HPOs fields will show the same values. This is important for smaller screens in which the values cannot be displayed fully due to screen size.

A User can be assigned to a Case by clicking on the Assign Case button, and then selecting one of the users associated to the account. A case can be unassigned by clicking on the "x" icon hovering over the user.

When you see View button in the case card, results are ready for review. Ability to delete a case can be found in the “…” selection

Case Search Functionality

Case search functionality allows users to swiftly find the case of interest when searching by CaseID/Case name. The search feature allows user to select a single result, or filter the whole case list with case ID exact or partial matches.
In future updates of the platform the search functionality will be expanded to include search by case assignee and date of case launch.

Case status

The case status is shown in the top-right corner of the case card. It has several possible values:

1. Finished processing - a View status indicates that the automated variant analysis and ranking has been completed. By clicking on the tag for a case with ready results, you can access a dashboard that describes the variant analysis results for the specific case ID. This page consist of Case specific information, AION ranked list of variants as well as manual filtering view.

2. Processing - a Processing status indicates the automated variant analysis and ranking is being processed. The bar on the top of the case card visualises the progress.

3. Rejected - a Rejected status indicates that something is missing with the VCF file. Hover over with to get more details of the origin of the problem. If  you still need clarification or further support check with the Nostos Genomics team.

   

4. Updating - an Updating status indicates that reanalysis is running in case you have edited the patient symptoms from the case page. You may open the case page, but will not see any results until the reanalysis has finished.

   

5. Error - an Error status indicates that there are technical issues while processing the case. Hover to see more details. If  you still need clarification or further support check with the Nostos Genomics team.

   

Filtering by Case Status

To facilitate finding or removing cases in a specific status on the general view, there is a checkbox filter that allows the user to apply a filter by status. The filtering allows multiple selection from the current cases status, including: processing, updating, error, rejected or finished processing.

The user can always see when the filter is active and the number of cases matching their search/filter. The filter can be easily removed/reset to show all the cases submitted in the account:

Delete cases

In case you want to remove a case from the list of cases, select Delete from the drop down menu accessible at the “…” icon.